Stem-loop sequence tae-MIR1135

Accession

MI0006197 (change log)

Description

Triticum aestivum miR1135 stem-loop

Gene family

MIPF0000382; MIR1122

Literature search

9 open access papers mention tae-MIR1135
(19 sentences)

Stem-loop

              a                u    u               a uaa 
5' cuacucccucc uucggaauuacuuguc cgga auggauguaucuaga c   a
   ||||||||||| |||||||||||||||| |||| ||||||||||||||| |    
3' gaugagggagg aagccuuaaugaacag gucu uaucuacauagaucu g   a
              c                c    u               - cau 

Deep sequencing

615839 reads, 1.85e+03 reads per million, 116 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Comments

Yao et al. misname this sequence miR519 in [1]. miR1135 is unrelated to mammalian miR-519;

Genome context

• Coordinates: 1A: 203987144-203987252 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0006197

Mature sequence tae-miR1135

• Accession: MIMAT0005370
• Sequence: 78 - cugcgacaaguaauuccgaacgga - 101
• Deep sequencing: 266422 reads, 116 experiments
• Evidence: experimental; cloned [1]

References

1. PMID:17543110 "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)" Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q Genome Biol. 8:R96(2007).