miRBase entry: tae-MIR1129

Stem-loop tae-MIR1129


Accession
MI0006191
Description
Triticum aestivum tae-MIR1129 precursor miRNA

Literature search
1 open access papers mention tae-MIR1129
(1 sentences)

Sequence

34 reads, 2 reads per million, 28 experiments
cggccgccauucagccagaagaagCAGCGAGCCAGCGGAGACCGGCAGccaaccaagggcgucgucgcuccaccauggaaucagcugcugauaugcucgaacacgaccugcaagcuucauguaucugcaacaccccugcuccucauccacgacccaagugaccugaaagagcaagcugcugcagagggcaauccucgauaucuaagaagaccucgggcuuauuaggggaagagagcucgugccagauccacucccaacugccuccguccaccauggacga
.(((.........))).((((.((((((((.((((.((((..((((.(((.......)))))))...)))).)..)))..)).))))))....((((((....)))...)))..)))).....((((((.((....(((((.(((..(((.......)))...)))..)))))...)).))))))(((((...(((((..(((....)))..)))))........((((.((..((....))....))...))))...))))).((((((...)))))).

Structure
-------------------------------------------------------------------------------------------------------------------------------------------------cggccgccauucagcca    ------------------------a      -  -G   -- C    -AC    A   aa 
                                                                                                                                                                  gaag                         agCAGC GA  CCA  G GGAG   CGGC Gcc  c
                                                                                                                                                                  ||||                         |||||| ||  |||  | ||||   |||| |||  c
                                                                                                                                                                  cuuc                         ucgucg cu  ggu  c ccuc   gcug cgg  a
agcagguaccaccugccuccgucaacccucaccuagaccgugcucgagagaaggggauuauucgggcuccagaagaaucuauagcuccuaacgggagacgucgucgaacgagaaaguccagugaacccagcaccuacuccucguccccacaacgucuaugua    gaacguccagcacaagcucguauag      a  aa   ac a    gcu    -   ga 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Yao et al. misname this sequence miR513 in [1]. miR1129 is unrelated to mammalian miR-513;

Genome context
4B: 306058840-306059119 [+]

Database links

Mature tae-miR1129

Accession MIMAT0005364
Description Triticum aestivum tae-miR1129 mature miRNA
Sequence 25 - CAGCGAGCCAGCGGAGACCGGCAG - 48
Evidence experimental
cloned [1], Northern [1]

References

  1. PubMed ID: 17543110
    Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
    Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
    Genome Biol (2007) 8:R96