Stem-loop sequence tae-MIR1128

Accession

MI0006190 (change log)

Description

Triticum aestivum miR1128 stem-loop

Gene family

MIPF0000382; MIR1122

Literature search

6 open access papers mention tae-MIR1128
(10 sentences)

Stem-loop

          a  a     g     ugcuu   uac               a     c              a   aaa                 acua 
5' auaugag gc ugggu agagg     agu   uacucccuccguccg aaaua uugucaucaaaaug aua   aaggggauguaucuaga    a
   ||||||| || ||||| |||||     |||   ||||||||||||||| ||||| |||||||||||||| |||   |||||||||||||||||    a
3' uguauuu cg guucg ucuuc     ucg   augagggaggcaggc uuuau aacaguaguuuuac uau   uuccccuacauagaucu    a
          g  -     g     ----u   uua               c     c              c   --c                 acau 

Deep sequencing

319630 reads, 749 reads per million, 116 experiments

Confidence

Annotation confidence: low

Feedback: Do you believe this miRNA is real?

Comments

Yao et al. misname this sequence miR512 in [1]. miR1128 is unrelated to mammalian miR-512;

Database links

• miRBase Tracker:MI0006190

Mature sequence tae-miR1128

• Accession: MIMAT0005363
• Sequence: 31 - uacuacucccuccguccgaaa - 51
• Deep sequencing: 7936 reads, 116 experiments
• Evidence: experimental; cloned [1], Northern [1]

References

1. PMID:17543110 "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)" Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q Genome Biol. 8:R96(2007).