Stem-loop sequence tae-MIR1127a

Accession

MI0006189 (change log)

Previous IDs

tae-MIR1127

Description

Triticum aestivum miR1127 stem-loop

Gene family

MIPF0000382; MIR1122

Literature search

7 open access papers mention tae-MIR1127a
(34 sentences)

Stem-loop

   ------        u   cucaac                       c   -      --    ------         aau  au 
5'       acauuaga gua      uacuccuuccguucggaauuacu guc caagaa  auaa      auguaucua   gc  u
         |||||||| |||      ||||||||||||||||||||||| ||| ||||||  ||||      |||||||||   ||   
3'       uguaaucu uau      augagggaggcaagccuuaauga cag guuuuu  uauu      uacauagau   ug  u
   cuaggu        -   ------                       a   u      ac    uuuacc         -gu  au 

Deep sequencing

268722 reads, 541 reads per million, 116 experiments

Confidence

Annotation confidence: low

Feedback: Do you believe this miRNA is real?

Comments

Yao et al. misname this sequence miR511 in [1]. miR1127 is unrelated to mammalian miR-511;

Genome context

• Coordinates: 4B: 126057135-126057285 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0006189

Mature sequence tae-miR1127a

• Accession: MIMAT0005362
• Previous IDs: tae-miR1127
• Sequence: 22 - uccuuccguucggaauuac - 40
• Deep sequencing: 9576 reads, 116 experiments
• Evidence: experimental; cloned [1]

References

1. PMID:17543110 "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)" Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q Genome Biol. 8:R96(2007).