miRBase entry: tae-MIR444a

Stem-loop tae-MIR444a


Accession
MI0006178
Description
Triticum aestivum tae-MIR444a precursor miRNA
Gene family
MIPF0000402; MIR444

Literature search
12 open access papers mention tae-MIR444a
(30 sentences)

Sequence

13655 reads, 92 reads per million, 116 experiments
gacucgagauaugcauguggcggcaccgagcaugaggcaacaacugcauuacuugcggggaaggcgcaaguaggacaccugcauuacuugcaaacaaggcgcaaaauuaauagaagaucaccauacuuguggcuuucuugcaagucaugcagUUGCUGCCUCAAGCUUGCUGCcucccuuugccaaagcuaucagaaaaaacauaaaguucuguuaguuucccuaaacuuuaaaaacauaaaguucuguuaguuucccuaaacuuuaaaacauguucuacaaaauugaucuagaaaugauuggcuuacugugcuaauuuaaagcaauauaauuacucgacaacugcauaugcacauguuagaagcaaggcaguagaauacuuauguuuucaucuacuggcagguagcaacauguauagauauauca
((....(..(((((((((.(..((..(......)..))..)..((((((.(((((((((((((.((((((((((....((.(((((.((((.........))))...)))).).))....)).)))))))).))))))))))))).)))))).((((((((...(((((((((((..((((....((((((.(((((...........))))).)))))).....(((((((......))))))).(((((((((....)))))....))))..(((((...........)))))..(((((((.......)))))))...................((((..(((....)))..)))).))))..))))))))(((.((....)).))).......))))))))))))))))))))..)...)).

Structure
-  cucg ga         ggcggcaccgagcaugaggcaacaacugcauuacuugcggggaaggcgcaaguaggacaccugcauuacuugcaaacaaggcgcaaaauuaauagaagaucaccauacuuguggcuuucuugcaagucaugcagU        CAA   -----------------------        cccuuugccaaagcuaucagaaaaaacauaaaguucuguuaguuucccuaaacuuuaaaaacauaaaguucuguuaguuucccuaaacuuuaaa 
 ga    a  uaugcaugu                                                                                                                                       UGCUGCCU   GCU                       UGCUGCcu                                                                                              a
 ||    |  |||||||||                                                                                                                                       ||||||||   |||                       ||||||||                                                                                              c
 cu    u  auauguaca                                                                                                                                       acgaugga   cgg                       augacgga                                                                                              a
a  -aua ag         ---------------------------------------------------------------------------------------------------------------------------------------        ---   ucaucuacuuuuguauucauaag        acgaagauuguacacguauacgucaacagcucauuaauauaacgaaauuuaaucgugucauucgguuaguaaagaucuaguuaaaacaucuugu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tae-miR444a

Accession MIMAT0005351
Description Triticum aestivum tae-miR444a mature miRNA
Sequence 153 - UUGCUGCCUCAAGCUUGCUGC - 173
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17543110
    Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
    Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
    Genome Biol (2007) 8:R96