Stem-loop sequence tae-MIR171a

Accession

MI0006175 (change log)

Previous IDs

tae-MIR171

Description

Triticum aestivum miR171a stem-loop

Gene family

MIPF0000030; MIR171_1

Literature search

19 open access papers mention tae-MIR171a
(66 sentences)

Stem-loop

   -------     u  u    au         u  a    c     -    -   ugccggccggccgua 
5'        uggaa gg cacu  gauguuggc cg cuca ucaga ccac gcc               g
          ||||| || ||||  ||||||||| || |||| ||||| |||| |||                
3'        acuuu uc guga  cuauaaccg gc gagu agucu ggug ugg               c
   cguacgu     c  -    cu         u  c    u     c    g   cguacgucuacguac 

Deep sequencing

73950 reads, 328 reads per million, 116 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates: 5A: 134091588-134091717 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0006175

Mature sequence tae-miR171a

• Accession: MIMAT0005348
• Previous IDs: tae-miR171
• Sequence: 89 - ugauugagccgugccaauauc - 109
• Deep sequencing: 71411 reads, 116 experiments
• Evidence: experimental; cloned [1]

References

1. PMID:17543110 "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)" Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q Genome Biol. 8:R96(2007).