Stem-loop sequence tae-MIR159a

Accession

MI0006170 (change log)

Previous IDs

tae-miR159a

Description

Triticum aestivum miR159a stem-loop

Gene family

MIPF0000010; MIR159

Literature search

32 open access papers mention tae-MIR159a
(237 sentences)

Stem-loop

   -- ug        a   u     uga  -    uac   a   u   -u  a   g    u     guuc    uau         auuag 
5'   g  gagcuccu uca uccaa   ag gguc   cga ggg uug  gc gcu cuug ucaug    ccac   ccuaucucc     a
     |  |||||||| ||| |||||   || ||||   ||| ||| |||  || ||| |||| |||||    ||||   |||||||||      
3'   c  cucgaggg agu agguu   uc ccag   gcu ccc agc  cg cga gagc aguac    ggug   ggauagagg     a
   ua gu        a   u     -ug  g    -uc   -   u   uu  c   g    c     guuu    uuc         agcau 

Deep sequencing

172193689 reads, 8.24e+05 reads per million, 116 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates: 3D: 840138-840314 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0006170

Mature sequence tae-miR159a

• Accession: MIMAT0005343
• Sequence: 154 - uuuggauugaagggagcucug - 174
• Deep sequencing: 172021691 reads, 116 experiments
• Evidence: experimental; cloned [1]

References

1. PMID:17543110 "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)" Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q Genome Biol. 8:R96(2007).