miRBase entry: rno-mir-92b

Stem-loop rno-mir-92b


Accession
MI0006167
Description
Rattus norvegicus rno-mir-92b precursor miRNA
Gene family
MIPF0000013; mir-25

Literature search
18 open access papers mention rno-mir-92b
(132 sentences)

Sequence

1498061 reads, 1125 reads per million, 483 experiments
ggugggcaggAGGGACGGGACGCGGUGCAGUGUUguucuuuccccugccaaUAUUGCACUCGUCCCGGCCUCCggcccccucg
((.((((.(((((..(((((((.((((((((((((..(........).))))))))))))))))))).))))).))))))...

Structure
---  u    a     GA       C            uu uuu 
   gg gggc ggAGG  CGGGACG GGUGCAGUGUUg  c   c
   || |||| |||||  ||||||| ||||||||||||  |    
   cc cccg CCUCC  GCCCUGC UCACGUUAUaac  g   c
gcu  -    g     -G       -            -c ucc 


Annotation confidence High
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Genome context
chr2: 188541034-188541116 [-]

Database links

Mature rno-miR-92b-5p

Accession MIMAT0017319
Description Rattus norvegicus rno-miR-92b-5p mature miRNA
Sequence 11 - AGGGACGGGACGCGGUGCAGUGUU - 34
Evidence experimental
SOLiD [3]

Mature rno-miR-92b-3p

Accession MIMAT0005340
Description Rattus norvegicus rno-miR-92b-3p mature miRNA
Sequence 52 - UAUUGCACUCGUCCCGGCCUCC - 73
Evidence experimental
cloned [1-2], SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  3. PubMed ID: 17805466
    Cloning and identification of novel microRNAs from rat hippocampus
    "He X, Zhang Q, Liu Y, Pan X"
    "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714