Stem-loop sequence rno-mir-770

AccessionMI0006165 (change log)
DescriptionRattus norvegicus miR-770 stem-loop
Gene family MIPF0000355; mir-770
Literature search

7 open access papers mention rno-mir-770
(46 sentences)

Stem-loop 
   --     c       a      gucu  g       a    
5'   cugug ccccagc ccacgu    gg ccacgug gca 
     ||||| ||||||| ||||||    || ||||||| || a
3'   gacgc ggggucg ggugca    cc ggugcac cgc 
   gg     c       a      --gu  g       -
Get sequence
Deep sequencing
11120 reads, 7.02 reads per million, 171 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr6: 133682965-133683040 [+]
sense
ENSRNOT00000062137 ; Mir770-201; exon 1
Clustered miRNAs
< 10kb from rno-mir-770
rno-mir-770chr6: 133682965-133683040 [+]
rno-mir-673chr6: 133691381-133691463 [+]
Database links

Mature sequence rno-miR-770-5p

Accession MIMAT0005338
Previous IDsrno-miR-770
Sequence

11 -  

agcaccacgugucugggccacg

 - 32

Get sequence
Deep sequencing4759 reads, 133 experiments
Evidence experimental; cloned [1], SOLiD [2]
Predicted targets

Mature sequence rno-miR-770-3p

Accession MIMAT0017317
Previous IDsrno-miR-770*
Sequence

46 -  

gugggccugacguggag

 - 62

Get sequence
Deep sequencing6358 reads, 159 experiments
Evidence experimental; SOLiD [2]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).