Stem-loop rno-mir-770

Accession

MI0006165

Description

Rattus norvegicus rno-mir-770 precursor miRNA

Gene family

MIPF0000355; mir-770

Literature search

7 open access papers mention rno-mir-770
(46 sentences)

Sequence

7398 reads, 88 reads per million, 153 experiments

cugugcccccAGCACCACGUGUCUGGGCCACGugagcaacgccacGUGGGCCUGACGUGGAGcuggggccgcaggg
(((((.(((((((.((((((....((.(((((((.((...))))))))).))..)))))).))))))).)))))..

Structure

--     c       A      GUCU  G       a  a 
  cugug ccccAGC CCACGU    GG CCACGug gc  
  ||||| ||||||| ||||||    || ||||||| || a
  gacgc ggggucG GGUGCA    CC GGUGcac cg  
gg     c       A      --GU  G       -  c 

Annotation confidence High

Genome context

chr6: 133682965-133683040 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-770

Mature rno-miR-770-5p

• Accession: MIMAT0005338
• Description: Rattus norvegicus rno-miR-770-5p mature miRNA
• Sequence: 11 - AGCACCACGUGUCUGGGCCACG - 32
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-770-3p

• Accession: MIMAT0017317
• Description: Rattus norvegicus rno-miR-770-3p mature miRNA
• Sequence: 46 - GUGGGCCUGACGUGGAG - 62
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249