Stem-loop sequence rno-mir-758

Accession

MI0006163 (change log)

Description

Rattus norvegicus miR-758 stem-loop

Gene family

MIPF0000126; mir-379

Stem-loop

   -     g     --    u      aga   c   c   a 
5'  ggugc ugagg  uggu gaccag   gca acg uau u
    ||||| |||||  |||| ||||||   ||| ||| |||  
3'  cuaug acucc  auca cugguc   ugu ugc gug u
   u     -     ca    c      cag   u   c   u 

Deep sequencing

69958 reads, 61.1 reads per million, 334 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr6: 133861498-133861575 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000062139 ; Mir758-201; exon 1

Clustered miRNAs

< 10kb from rno-mir-758

• rno-mir-379: chr6: 133857700-133857784 [+]
• rno-mir-411: chr6: 133858849-133858924 [+]
• rno-mir-299b: chr6: 133859295-133859412 [-]
• rno-mir-299a: chr6: 133859324-133859386 [+]
• rno-mir-3579: chr6: 133860473-133860585 [-]
• rno-mir-380: chr6: 133860490-133860566 [+]
• rno-mir-323: chr6: 133861199-133861284 [+]
• rno-mir-758: chr6: 133861498-133861575 [+]
• rno-mir-329: chr6: 133862168-133862264 [+]
• rno-mir-494: chr6: 133864370-133864452 [+]
• rno-mir-679: chr6: 133864564-133864700 [+]
• rno-mir-1193: chr6: 133864698-133864817 [+]
• rno-mir-666: chr6: 133866523-133866621 [+]
• rno-mir-543: chr6: 133866660-133866739 [+]
• rno-mir-495: chr6: 133868288-133868367 [+]
• rno-mir-667: chr6: 133869570-133869661 [+]

Database links

• EntrezGene:Mir758
• miRBase Tracker:MI0006163

Mature sequence rno-miR-758-5p

• Accession: MIMAT0017316
• Previous IDs: rno-miR-758*
• Sequence: 12 - ugguugaccagagagcacacg - 32
• Deep sequencing: 10 reads, 10 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-758-5p
  • miRDB:rno-miR-758-5p

Mature sequence rno-miR-758-3p

• Accession: MIMAT0005335
• Previous IDs: rno-miR-758
• Sequence: 47 - uuugugaccugguccacuaacc - 68
• Deep sequencing: 69923 reads, 334 experiments
• Evidence: experimental; cloned [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-758-3p
  • miRDB:rno-miR-758-3p
  • microrna.org:rno-miR-758-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).