Stem-loop rno-mir-758

Accession

MI0006163

Description

Rattus norvegicus rno-mir-758 precursor miRNA

Gene family

MIPF0000126; mir-379

Sequence

66090 reads, 462 reads per million, 328 experiments

ggugcgugaggUGGUUGACCAGAGAGCACACGcuauauuugugccgUUUGUGACCUGGUCCACUAACCcucaguaucu
(((((.(((((((((.((((((.(.(((.(((.(((....))).))).)))..))))))).))))..)))))))))).

Structure

-     g     --    U      A -A   C   c   a 
 ggugc ugagg  UGGU GACCAG G  GCA ACG uau u
 ||||| |||||  |||| |||||| |  ||| ||| |||  
 cuaug acucC  AUCA CUGGUC C  UGU Ugc gug u
u     -     CA    C      - AG   U   c   u 

Annotation confidence Not enough data

Genome context

chr6: 133861498-133861575 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from rno-mir-758

Mature rno-miR-758-5p

• Accession: MIMAT0017316
• Description: Rattus norvegicus rno-miR-758-5p mature miRNA
• Sequence: 12 - UGGUUGACCAGAGAGCACACG - 32
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-758-3p

• Accession: MIMAT0005335
• Description: Rattus norvegicus rno-miR-758-3p mature miRNA
• Sequence: 47 - UUUGUGACCUGGUCCACUAACC - 68
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249