Stem-loop sequence rno-mir-742

Accession

MI0006161 (change log)

Description

Rattus norvegicus miR-742 stem-loop

Gene family

MIPF0000412; mir-742

Literature search

2 open access papers mention rno-mir-742
(3 sentences)

Stem-loop

   --   ag           -      u   aa    guga 
5'   ggc  ugcuuuacuca cauggu gcu  ucac    a
     |||  ||||||||||| |||||| |||  ||||    a
3'   ucg  augaaaugggu guacca cga  agug    u
   ac   aa           u      c   -a    aaug 

Deep sequencing

580 reads, 6.25 reads per million, 32 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chrX: 151260313-151260389 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-742

• rno-mir-883: chrX: 151260703-151260779 [-]
• rno-mir-742: chrX: 151260313-151260389 [-]
• rno-mir-743b: chrX: 151253318-151253394 [-]
• rno-mir-743a: chrX: 151252828-151252903 [-]

Database links

• EntrezGene:Mir742
• miRBase Tracker:MI0006161

Mature sequence rno-miR-742-5p

• Accession: MIMAT0017314
• Previous IDs: rno-miR-742*
• Sequence: 11 - uacucacaugguugcuaauca - 31
• Deep sequencing: 368 reads, 26 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-742-5p
  • miRDB:rno-miR-742-5p

Mature sequence rno-miR-742-3p

• Accession: MIMAT0005333
• Previous IDs: rno-miR-742
• Sequence: 46 - gaaagccaccauguuggguaaa - 67
• Deep sequencing: 212 reads, 24 experiments
• Evidence: experimental; cloned [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-742-3p
  • miRDB:rno-miR-742-3p
  • microrna.org:rno-miR-742-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).