Stem-loop sequence rno-mir-708

AccessionMI0006160 (change log)
DescriptionRattus norvegicus miR-708 stem-loop
Gene family MIPF0000397; mir-708
Literature search

15 open access papers mention rno-mir-708
(81 sentences)

Stem-loop 
   -ga        a           a     c  g gg   a  a 
5'    cugcccuc aggagcuuaca ucuag ug g  uag ug c
      |||||||| ||||||||||| ||||| || |  ||| || u
3'    gacgggag ucuucgagugu agauc ac c  guu ac u
   ggg        a           c     a  a aa   c  g
Get sequence
Deep sequencing
85910 reads, 21.7 reads per million, 446 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr1: 161221246-161221333 [+]
intergenic
Database links

Mature sequence rno-miR-708-5p

Accession MIMAT0005331
Previous IDsrno-miR-708
Sequence

11 -  

aaggagcuuacaaucuagcuggg

 - 33

Get sequence
Deep sequencing38180 reads, 428 experiments
Evidence experimental; cloned [1], SOLiD [2]
Predicted targets

Mature sequence rno-miR-708-3p

Accession MIMAT0005332
Previous IDsrno-miR-708*
Sequence

57 -  

caacuagacugugagcuucuag

 - 78

Get sequence
Deep sequencing47530 reads, 413 experiments
Evidence experimental; cloned [1], SOLiD [2]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).