miRBase entry: rno-mir-708

Stem-loop rno-mir-708


Accession
MI0006160
Description
Rattus norvegicus rno-mir-708 precursor miRNA
Gene family
MIPF0000397; mir-708

Literature search
15 open access papers mention rno-mir-708
(81 sentences)

Sequence

68650 reads, 121 reads per million, 435 experiments
gacugcccucAAGGAGCUUACAAUCUAGCUGGGgguagaugacuugcacuugaacaCAACUAGACUGUGAGCUUCUAGagggcagggg
..((((((((.(((((((((((.(((((.((.(..(((.((.....)).)))..).)).))))).))))))))))).))))))))...

Structure
-ga        A           A     C  G gg   a  a 
   cugcccuc AGGAGCUUACA UCUAG UG G  uag ug c
   |||||||| ||||||||||| ||||| || |  ||| || u
   gacgggaG UCUUCGAGUGU AGAUC AC c  guu ac u
ggg        A           C     A  a aa   c  g 


Annotation confidence High
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Genome context
chr1: 161221246-161221333 [+]

Database links

Mature rno-miR-708-5p

Accession MIMAT0005331
Description Rattus norvegicus rno-miR-708-5p mature miRNA
Sequence 11 - AAGGAGCUUACAAUCUAGCUGGG - 33
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-708-3p

Accession MIMAT0005332
Description Rattus norvegicus rno-miR-708-3p mature miRNA
Sequence 57 - CAACUAGACUGUGAGCUUCUAG - 78
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249