Stem-loop rno-mir-673

Accession

MI0006158

Description

Rattus norvegicus rno-mir-673 precursor miRNA

Gene family

MIPF0000405; mir-673

Literature search

3 open access papers mention rno-mir-673
(4 sentences)

Sequence

26193 reads, 53 reads per million, 310 experiments

gccugaggggCUCACAGCUCCGGUCCUUGGAGcuccagagaaaauguugcUCCGGGACUGAGUUCUGUGCACcccccuugccc
((..(.((((..(((((..((((((((.(((((..((.......))..)))))))))))).)..)))))..)))).)..))..

Structure

--  cu a    CU     CU -       U     uc  ga 
  gc  g gggg  CACAG  C CGGUCCU GGAGc  ca  g
  ||  | ||||  |||||  | ||||||| |||||  ||  a
  cg  c cccC  GUGUC  G GUCAGGG CCUcg  gu  a
cc  uu c    AC     UU A       -     uu  aa 

Annotation confidence High

Genome context

chr6: 133691381-133691463 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-673

Mature rno-miR-673-5p

• Accession: MIMAT0005328
• Description: Rattus norvegicus rno-miR-673-5p mature miRNA
• Sequence: 11 - CUCACAGCUCCGGUCCUUGGAG - 32
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-673-3p

• Accession: MIMAT0017313
• Description: Rattus norvegicus rno-miR-673-3p mature miRNA
• Sequence: 51 - UCCGGGACUGAGUUCUGUGCAC - 72
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249