Stem-loop sequence rno-mir-672

Accession

MI0006157 (change log)

Description

Rattus norvegicus miR-672 stem-loop

Gene family

MIPF0000391; mir-672

Literature search

7 open access papers mention rno-mir-672
(13 sentences)

Stem-loop

   --      g        u     u           guaua 
5'   ccuuua uuuugagg uggug acuguguguga     c
     |||||| |||||||| ||||| |||||||||||     a
3'   gggagu aaagcuuc accgc ugacacacacu     u
   gu      g        u     -           auuua 

Deep sequencing

29199 reads, 16.4 reads per million, 432 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chrX: 74982070-74982149 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir672
• miRBase Tracker:MI0006157

Mature sequence rno-miR-672-5p

• Accession: MIMAT0005327
• Previous IDs: rno-miR-672
• Sequence: 11 - ugagguugguguacuguguguga - 33
• Deep sequencing: 25592 reads, 425 experiments
• Evidence: experimental; cloned [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-672-5p
  • miRDB:rno-miR-672-5p
  • microrna.org:rno-miR-672-5p

Mature sequence rno-miR-672-3p

• Accession: MIMAT0017312
• Previous IDs: rno-miR-672*
• Sequence: 49 - acacacagucgccaucuucga - 69
• Deep sequencing: 3606 reads, 309 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-672-3p
  • miRDB:rno-miR-672-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).