Stem-loop rno-mir-672

Accession

MI0006157

Description

Rattus norvegicus rno-mir-672 precursor miRNA

Gene family

MIPF0000391; mir-672

Literature search

7 open access papers mention rno-mir-672
(13 sentences)

Sequence

23533 reads, 64 reads per million, 423 experiments

ccuuuaguuuUGAGGUUGGUGUACUGUGUGUGAguauacauauuuaucACACACAGUCGCCAUCUUCGAaagugagggug
((((((.((((((((.(((((.(((((((((((..(.......)..)))))))))))))))).)))))))).))))))..

Structure

--      g        U     U           gu ua 
  ccuuua uuuUGAGG UGGUG ACUGUGUGUGA  a  c
  |||||| |||||||| ||||| |||||||||||  |  a
  gggagu aaAGCUUC ACCGC UGACACACAcu  u  u
gu      g        U     -           au ua 

Annotation confidence High

Genome context

chrX: 74982070-74982149 [-]

Mature rno-miR-672-5p

• Accession: MIMAT0005327
• Description: Rattus norvegicus rno-miR-672-5p mature miRNA
• Sequence: 11 - UGAGGUUGGUGUACUGUGUGUGA - 33
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-672-3p

• Accession: MIMAT0017312
• Description: Rattus norvegicus rno-miR-672-3p mature miRNA
• Sequence: 49 - ACACACAGUCGCCAUCUUCGA - 69
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249