miRBase entry: rno-mir-495

Stem-loop rno-mir-495


Accession
MI0006152
Description
Rattus norvegicus rno-mir-495 precursor miRNA
Gene family
MIPF0000110; mir-329

Literature search
9 open access papers mention rno-mir-495
(66 sentences)

Sequence

25791 reads, 56 reads per million, 332 experiments
uaccugaaaagaaguugcccauguuauuuuucgcuuuuauuugugacgAAACAAACAUGGUGCACUUCUUuuucgauauc
...(.((((((((((.(((((((((.(((.((((........)))).)))...))))))).)))))))))))).).....

Structure
--uac u          u  -       --a   u    uuu 
     c gaaaagaagu gc ccauguu   uuu ucgc   u
     | |||||||||| || |||||||   ||| ||||    
     g uuuUUCUUCA CG GGUACAA   AAg agug   a
cuaua c          -  U       ACA   c    uuu 


Annotation confidence Not enough data
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Genome context
chr6: 133868288-133868367 [+]
Clustered miRNAs
23 other miRNAs are < 10 kb from rno-mir-495
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-495

Accession MIMAT0005320
Description Rattus norvegicus rno-miR-495 mature miRNA
Sequence 49 - AAACAAACAUGGUGCACUUCUU - 70
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249