Stem-loop rno-mir-484

Accession

MI0006151

Description

Rattus norvegicus rno-mir-484 precursor miRNA

Gene family

MIPF0000219; mir-484

Literature search

6 open access papers mention rno-mir-484
(12 sentences)

Sequence

13478 reads, 55 reads per million, 478 experiments

gcaugcagggaagggggggcggggccucgcggcccugcugccucgUCAGGCUCAGUCCCCUCCCGAUaaaccucaaa
.......((((.((((((((((((((....)))))))))((((....))))....))))))))).............

Structure

------gcaugca    a     ggcggggccucgcggcccugcu    c 
             ggga ggggg                      gccu g
             |||| |||||                      ||||  
             CCCU CCCCU                      CGGA U
aaacuccaaaUAG    -     ------------------GACU    C 

Annotation confidence Not enough data

Genome context

chr10: 27845-27921 [-]

Mature rno-miR-484

• Accession: MIMAT0005319
• Description: Rattus norvegicus rno-miR-484 mature miRNA
• Sequence: 46 - UCAGGCUCAGUCCCCUCCCGAU - 67
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249