Stem-loop sequence rno-mir-484

Accession

MI0006151 (change log)

Description

Rattus norvegicus miR-484 stem-loop

Gene family

MIPF0000219; mir-484

Literature search

6 open access papers mention rno-mir-484
(12 sentences)

Stem-loop

   ------gcaugca    a     ggcggggccucgcggccc 
5'              ggga ggggg                  u
                |||| |||||                   
3'              cccu ccccu                  g
   aaacuccaaauag    -     gacucggacugcuccguc 

Deep sequencing

19170 reads, 1.64 reads per million, 488 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (Rnor_6.0; GCA_000001895.4)	Overlapping transcripts
chr10: 27845-27921 [-]	intergenic
chr10: 908408-908484 [-]	intergenic

Database links

• EntrezGene:Mir484
• miRBase Tracker:MI0006151

Mature sequence rno-miR-484

• Accession: MIMAT0005319
• Sequence: 46 - ucaggcucaguccccucccgau - 67
• Deep sequencing: 18887 reads, 488 experiments
• Evidence: experimental; cloned [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-484
  • miRDB:rno-miR-484
  • microrna.org:rno-miR-484

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).