miRBase entry: rno-mir-471

Stem-loop rno-mir-471


Accession
MI0006150
Description
Rattus norvegicus rno-mir-471 precursor miRNA
Gene family
MIPF0000423; mir-471

Literature search
1 open access papers mention rno-mir-471
(1 sentences)

Sequence

2345 reads, 386 reads per million, 53 experiments
agcagugcuuUACGUAGUAUAGUGCUUUUCACauuacacaaaaagUGAAAGGUGCCAUACUAUGUacaggaaggcuua
(((..(.((.((((((((((.(((((((((((............))))))))))).)))))))))).)).)..)))..

Structure
--   ag g  u          A           auuac 
  agc  u cu UACGUAGUAU GUGCUUUUCAC     a
  |||  | || |||||||||| |||||||||||      
  ucg  a ga aUGUAUCAUA CGUGGAAAGUg     c
au   ga g  c          C           aaaaa 


Annotation confidence High
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Genome context
chrX: 151272104-151272181 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from rno-mir-471
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-471-5p

Accession MIMAT0005318
Description Rattus norvegicus rno-miR-471-5p mature miRNA
Sequence 11 - UACGUAGUAUAGUGCUUUUCAC - 32
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-471-3p

Accession MIMAT0017310
Description Rattus norvegicus rno-miR-471-3p mature miRNA
Sequence 46 - UGAAAGGUGCCAUACUAUGU - 65
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249