miRBase entry: rno-mir-463

Stem-loop rno-mir-463


Accession
MI0006149
Description
Rattus norvegicus rno-mir-463 precursor miRNA
Gene family
MIPF0000425; mir-463

Literature search
4 open access papers mention rno-mir-463
(9 sentences)

Sequence

11856 reads, 1367 reads per million, 95 experiments
acccuguuuUACCUAAUUUGUUGUCCAUCAuguaaaauuuaagugaUGAUAGACGCCAAUUUGGGUAGaggaaggcuc
.((.(.((((((((((.(((.((((((((((.(((...))).))))))...)))).))).)))))))))).).))...

Structure
--a  c g          U   U    ---      g   a 
   cc u uuuUACCUAA UUG UGUC   CAUCAu uaa  
   || | |||||||||| ||| ||||   |||||| ||| a
   gg a gaGAUGGGUU AAC GCAG   GUagug auu  
cuc  a g          U   C    AUA      a   u 


Annotation confidence High
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Genome context
chrX: 151276029-151276106 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from rno-mir-463
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-463-5p

Accession MIMAT0017309
Description Rattus norvegicus rno-miR-463-5p mature miRNA
Sequence 10 - UACCUAAUUUGUUGUCCAUCA - 30
Evidence experimental
SOLiD [2]

Mature rno-miR-463-3p

Accession MIMAT0005317
Description Rattus norvegicus rno-miR-463-3p mature miRNA
Sequence 47 - UGAUAGACGCCAAUUUGGGUAG - 68
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249