Stem-loop sequence rno-mir-411

Accession

MI0006144 (change log)

Description

Rattus norvegicus miR-411 stem-loop

Gene family

MIPF0000126; mir-379

Literature search

6 open access papers mention rno-mir-411
(10 sentences)

Stem-loop

   --cuug   a a    a      a a       - uuu 
5'       gag g uagu gaccgu u gcguacg c   a
         ||| | |||| |||||| | ||||||| |   u
3'       cuc c auca cuggca a uguaugc g   c
   cuauga   c a    c      c a       a ugu 

Deep sequencing

2602170 reads, 1.69e+03 reads per million, 490 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr6: 133858849-133858924 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000053697 ; Mir411-201; exon 1

Clustered miRNAs

< 10kb from rno-mir-411

• rno-mir-379: chr6: 133857700-133857784 [+]
• rno-mir-411: chr6: 133858849-133858924 [+]
• rno-mir-299b: chr6: 133859295-133859412 [-]
• rno-mir-299a: chr6: 133859324-133859386 [+]
• rno-mir-3579: chr6: 133860473-133860585 [-]
• rno-mir-380: chr6: 133860490-133860566 [+]
• rno-mir-323: chr6: 133861199-133861284 [+]
• rno-mir-758: chr6: 133861498-133861575 [+]
• rno-mir-329: chr6: 133862168-133862264 [+]
• rno-mir-494: chr6: 133864370-133864452 [+]
• rno-mir-679: chr6: 133864564-133864700 [+]
• rno-mir-1193: chr6: 133864698-133864817 [+]
• rno-mir-666: chr6: 133866523-133866621 [+]
• rno-mir-543: chr6: 133866660-133866739 [+]
• rno-mir-495: chr6: 133868288-133868367 [+]

Database links

• EntrezGene:Mir411
• miRBase Tracker:MI0006144

Mature sequence rno-miR-411-5p

• Accession: MIMAT0005312
• Previous IDs: rno-miR-411
• Sequence: 11 - uaguagaccguauagcguacg - 31
• Deep sequencing: 2533698 reads, 490 experiments
• Evidence: experimental; cloned [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-411-5p
  • miRDB:rno-miR-411-5p
  • microrna.org:rno-miR-411-5p

Mature sequence rno-miR-411-3p

• Accession: MIMAT0017304
• Previous IDs: rno-miR-411*
• Sequence: 46 - uauguaacacgguccacuaa - 65
• Deep sequencing: 68409 reads, 398 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-411-3p
  • miRDB:rno-miR-411-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).