Stem-loop rno-mir-190b

Accession

MI0006135

Description

Rattus norvegicus rno-mir-190b precursor miRNA

Gene family

MIPF0000076; mir-190

Literature search

6 open access papers mention rno-mir-190b
(6 sentences)

Sequence

10962 reads, 25 reads per million, 443 experiments

ugcuucugugUGAUAUGUUUGAUAUUAGGUUguuaaauuaugaaccAACUAAAUGUCAAACAUUCUcacagcagugag
.(((.(((((.((.((((((((((((.(((((((........)).))))).)))))))))))))).))))).)))...

Structure

--u   u     U  U            A     -  aaa 
   gcu cugug GA AUGUUUGAUAUU GGUUg uu   u
   ||| ||||| || |||||||||||| ||||| ||    
   uga gacac CU UACAAACUGUAA UCAAc aa   u
gag   c     U  -            A     c  gua 

Annotation confidence Not enough data

Genome context

chr2: 189421137-189421214 [+]

Mature rno-miR-190b-5p

• Accession: MIMAT0005302
• Description: Rattus norvegicus rno-miR-190b-5p mature miRNA
• Sequence: 11 - UGAUAUGUUUGAUAUUAGGUU - 31
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-190b-3p

• Accession: MIMAT0017298
• Description: Rattus norvegicus rno-miR-190b-3p mature miRNA
• Sequence: 47 - AACUAAAUGUCAAACAUUCU - 66
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249