Stem-loop sequence rno-mir-188

AccessionMI0006134 (change log)
DescriptionRattus norvegicus miR-188 stem-loop
Gene family MIPF0000113; mir-188
Literature search

6 open access papers mention rno-mir-188
(8 sentences)

Stem-loop 
   ---c  uc   ca  uc         gu      -cgag u 
5'     cc  ucu  ca  ccuugcaug  ggaggg     c c
       ||  |||  ||  |||||||||  ||||||     | u
3'     gg  agg  gu  gggacguac  ccuccu     g c
   gagu  -u   ac  uu         ac      caaaa u
Get sequence
Deep sequencing
20207 reads, 1.02 reads per million, 488 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chrX: 16110270-16110349 [+]
intergenic
Clustered miRNAs
< 10kb from rno-mir-188
rno-mir-532chrX: 16109870-16109948 [+]
rno-mir-188chrX: 16110270-16110349 [+]
rno-mir-362chrX: 16117170-16117234 [+]
rno-mir-3560chrX: 16117863-16117974 [-]
rno-mir-501chrX: 16117874-16117957 [+]
Database links

Mature sequence rno-miR-188-5p

Accession MIMAT0005301
Previous IDsrno-miR-188
Sequence

11 -  

caucccuugcaugguggaggg

 - 31

Get sequence
Deep sequencing19922 reads, 488 experiments
Evidence experimental; cloned [1], SOLiD [2]
Predicted targets

Mature sequence rno-miR-188-3p

Accession MIMAT0017297
Previous IDsrno-miR-188*
Sequence

50 -  

cucccacaugcaggguuugc

 - 69

Get sequence
Deep sequencing273 reads, 152 experiments
Evidence experimental; SOLiD [2]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).