Stem-loop rno-mir-181d

Accession

MI0006132

Description

Rattus norvegicus rno-mir-181d precursor miRNA

Gene family

MIPF0000007; mir-181

Literature search

25 open access papers mention rno-mir-181d
(46 sentences)

Sequence

239363 reads, 1434 reads per million, 498 experiments

ggucacaauuAACAUUCAUUGUUGUCGGUGGGUugugaggagaagaccagacCCACCGGGGGAUGAAUGUCAcuguggcuggg
(((((((....(((((((((....((((((((((.((.(.......)))))))))))))..)))))))))...)))))))...

Structure

---       auuA         GUUG          g  a ga 
   ggucaca    ACAUUCAUU    UCGGUGGGUu ug g  g
   |||||||    |||||||||    |||||||||| || |  a
   ucggugu    UGUAAGUAG    GGCCACCcag ac c  a
ggg       -cAC         --GG          -  - ag 

Annotation confidence High

Genome context

chr19: 25290051-25290133 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-181d

Mature rno-miR-181d-5p

• Accession: MIMAT0005299
• Description: Rattus norvegicus rno-miR-181d-5p mature miRNA
• Sequence: 11 - AACAUUCAUUGUUGUCGGUGGGU - 33
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-181d-3p

• Accession: MIMAT0017296
• Description: Rattus norvegicus rno-miR-181d-3p mature miRNA
• Sequence: 53 - CCACCGGGGGAUGAAUGUCA - 72
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249