miRBase entry: mmu-mir-467e

Stem-loop mmu-mir-467e


Accession
MI0006128
Symbol
MGI: Mir467e
Description
Mus musculus mmu-mir-467e precursor miRNA
Gene family
MIPF0000316; mir-467

Literature search
21 open access papers mention mmu-mir-467e
(68 sentences)

Sequence

24879 reads, 337 reads per million, 101 experiments
gccugugugcAUAAGUGUGAGCAUGUAUAUGUguguauauuuuaugcAUAUACAUACACACACCUAUAUacacaugcacacagacau
..((((((((((..(((((.(.(((((((((((((.......))))))))))))).).)))))..........))))))))))....

Structure
--gc          --------AA     A C             ua 
    cugugugcAU          GUGUG G AUGUAUAUGUgug  u
    ||||||||||          ||||| | |||||||||||||  a
    gacacacgua          CACAC C UACAUAUAcguau  u
uaca          cacaUAUAUC     A A             uu 


Annotation confidence High
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Genome context
chr2: 10505721-10505807 [+]
Clustered miRNAs
24 other miRNAs are < 10 kb from mmu-mir-467e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-467e-5p

Accession MIMAT0005293
Description Mus musculus mmu-miR-467e-5p mature miRNA
Sequence 11 - AUAAGUGUGAGCAUGUAUAUGU - 32
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

Mature mmu-miR-467e-3p

Accession MIMAT0005294
Description Mus musculus mmu-miR-467e-3p mature miRNA
Sequence 48 - AUAUACAUACACACACCUAUAU - 69
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009