Stem-loop sequence rno-mir-879

Accession

MI0006121 (change log)

Description

Rattus norvegicus miR-879 stem-loop

Gene family

MIPF0000421; mir-879

Literature search

3 open access papers mention rno-mir-879
(4 sentences)

Stem-loop

   --uu    a   ag      au    c        gga 
5'     cuag ucc  aggcuu  agcu uaagccuu   u
       |||| |||  ||||||  |||| ||||||||    
3'     gguc agg  uucgaa  ucgg auucggag   a
   cagc    g   cu      cu    u        aaa 

Deep sequencing

142687 reads, 90.4 reads per million, 436 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr4: 21673635-21673710 [-]
• Overlapping transcripts:

  sense

  ENSRNOT00000007723 ; 9330182L06Rik-201; intron 2

Database links

• EntrezGene:Mir879
• miRBase Tracker:MI0006121

Mature sequence rno-miR-879-5p

• Accession: MIMAT0005287
• Previous IDs: rno-miR-879
• Sequence: 11 - agaggcuuauagcucuaagcc - 31
• Deep sequencing: 136184 reads, 432 experiments
• Evidence: experimental; cloned [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-879-5p
  • miRDB:rno-miR-879-5p
  • microrna.org:rno-miR-879-5p

Mature sequence rno-miR-879-3p

• Accession: MIMAT0017291
• Previous IDs: rno-miR-879*
• Sequence: 46 - cuuauggcuucaagcuuucgg - 66
• Deep sequencing: 6459 reads, 227 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-879-3p
  • miRDB:rno-miR-879-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).