Stem-loop sequence rno-mir-878

AccessionMI0006120 (change log)
DescriptionRattus norvegicus miR-878 stem-loop
Gene family MIPF0000434; mir-878
Literature search

1 open access papers mention rno-mir-878
(2 sentences)

   --u  ag g           -   c     gu   g  a 
5'    gc  u cuuuaucuagu ugg uguca  cac ug a
      ||  | ||||||||||| ||| |||||  ||| || a
3'    cg  a gagauggguca acc acagu  gug ac c
   acu  gg g           u   -     ac   a  u 
Get sequence
Deep sequencing
3230 reads, 79.4 reads per million, 63 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chrX: 151283461-151283537 [-]
Clustered miRNAs
< 10kb from rno-mir-878
rno-mir-871chrX: 151287787-151287863 [-]
rno-mir-881chrX: 151283910-151283986 [-]
rno-mir-878chrX: 151283461-151283537 [-]
rno-mir-880chrX: 151281988-151282065 [-]
rno-mir-463chrX: 151276029-151276106 [-]
rno-mir-741chrX: 151274356-151274451 [-]
Database links

Mature sequence rno-miR-878

Accession MIMAT0005286

46 - 


 - 67

Get sequence
Deep sequencing962 reads, 31 experiments
Evidence experimental; cloned [1], SOLiD [2]
Predicted targets


PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).