Stem-loop sequence rno-mir-743b

Accession

MI0006115 (change log)

Description

Rattus norvegicus miR-743b stem-loop

Gene family

MIPF0000386; mir-743

Literature search

4 open access papers mention rno-mir-743b
(11 sentences)

Stem-loop

   --u  ag    g       ac       ca     uga 
5'    gc  ugcu uguucag  ugguguc  ucaug   a
      ||  |||| |||||||  |||||||  |||||   a
3'    cg  auga auaaguc  accacag  agugu   u
   acu  ga    g       au       aa     uua 

Deep sequencing

31860 reads, 700 reads per million, 152 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chrX: 151253318-151253394 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-743b

• rno-mir-883: chrX: 151260703-151260779 [-]
• rno-mir-742: chrX: 151260313-151260389 [-]
• rno-mir-743b: chrX: 151253318-151253394 [-]
• rno-mir-743a: chrX: 151252828-151252903 [-]

Database links

• EntrezGene:Mir743b
• miRBase Tracker:MI0006115

Mature sequence rno-miR-743b-5p

• Accession: MIMAT0017288
• Previous IDs: rno-miR-743b*
• Sequence: 11 - uguucagacugguguccaucau - 32
• Deep sequencing: 2784 reads, 50 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-743b-5p
  • miRDB:rno-miR-743b-5p

Mature sequence rno-miR-743b-3p

• Accession: MIMAT0005280
• Previous IDs: rno-miR-743b
• Sequence: 46 - gaaagacaccauacugaauaga - 67
• Deep sequencing: 29071 reads, 147 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-743b-3p
  • miRDB:rno-miR-743b-3p
  • microrna.org:rno-miR-743b-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).