miRBase entry: smo-MIR319

Stem-loop smo-MIR319


Accession
MI0006090
Description
Selaginella moellendorffii smo-MIR319 precursor miRNA
Gene family
MIPF0000010; MIR159


Sequence

uuguucgcgggagcuuccuuuaguucaacucagguggagcuggagaugguccUGCUGCCGACUCAUGCAUCCgcguaccuuggaaaguuacaaugccaguuucagaaagagagcuucuuuuguccagugguagacgcuugcaugaugcgggagcugguucucucucgagcuuugaucgaccugccuuggacugaagggagcucccuuguucccac
..(..((.((((((((((((((((((((..(((((.(((((.((((.((.((.(((.(((..(((((((..((..(((((((((......(((....(((((........)))))....)))))))).))))..))..)))))))..))).))).))..)).)))).))).....)).)))))..)))))))))))))))))))).))..)....

Structure
--uu uu  c                    cu     g  -----   g    u  -u  U   G   AC       UC  cg    -     aaguua   ugcc     cag 
    g  cg gggagcuuccuuuaguucaa  caggu ga     gcu gaga gg  cc GCU CCG  UCAUGCA  Cg  uacc uugga      caa    aguuu   a
    |  || ||||||||||||||||||||  ||||| ||     ||| |||| ||  || ||| |||  |||||||  ||  |||| |||||      |||    |||||    
    c  gu cccucgagggaagucagguu  gucca cu     cga cucu uc  gg cga ggc  aguacgu  gc  augg gaccu      guu    ucgag   a
cacc uu  u                    cc     g  aguuu   g    c  uu  u   g   gu       uc  ag    u     ------   uucu     aga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature smo-miR319

Accession MIMAT0005260
Description Selaginella moellendorffii smo-miR319 mature miRNA
Sequence 53 - UGCUGCCGACUCAUGCAUCC - 72
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769