Stem-loop smo-MIR171c

Accession

MI0006058

Description

Selaginella moellendorffii smo-MIR171c precursor miRNA

Gene family

MIPF0000030; MIR171_1

Sequence

acggaucaucgaaaucgaugugugcuuugauauuggcaugauucaaucccaugacaccaucuacaaacaccgaaaagagaagcuuuacgauggucuagcaaaguucuucucgcgaaagagaagccuuacgaagaucuagccaaaauuucguggcauggacgagcaaagggugcuggcauuggaUUGAGUCGCGCCAAUAUCAUGugauugcguug
..(.(((((((....))))).)).)..((((((((((.(((((((((((.(((..((((((...........................))))))((((((.....((((((......))))))((((.....(.((((((((........)))).))))).....)))).))))))))).))))))))))).)))))))))).............

Structure

acggaucaucgaaaucgaugugugcuu          a           c   acaccaucuacaaacaccgaaaagagaagcuuuacgauggu      aaguucuucucgcgaaagagaag    acgaa a    -    aaa 
                           ugauauuggc ugauucaaucc aug                                         cuagca                       ccuu     g ucua gcca   u
                           |||||||||| ||||||||||| |||                                         ||||||                       ||||     | |||| ||||    
                           ACUAUAACCG GCUGAGUUagg uac                                         ggucgu                       ggaa     c aggu cggu   u
--------------guugcguuaguGU          C           u   -----------------------------------------      ----------------------g    acgag -    a    gcu 

Annotation confidence Not enough data

Genome context

Unknown

Mature smo-miR171c

• Accession: MIMAT0005225
• Description: Selaginella moellendorffii smo-miR171c mature miRNA
• Sequence: 184 - UUGAGUCGCGCCAAUAUCAUG - 204
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769