miRBase entry: smo-MIR160b

Stem-loop smo-MIR160b


Accession
MI0006052
Description
Selaginella moellendorffii smo-MIR160b precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
1 open access papers mention smo-MIR160b
(3 sentences)

Sequence

acaaacaaucccUGCCUGGCUCCCUGUAUGCCAccugagaagcccaccgaaguguuucggcaggauuccuagcuggcgugcggggagccaugcagagcuucucucuuu
...........((((.(((((((((((((((((.(((.(((.((..(((((....)))))..)).))).))).))))))))))))))))).)))).............

Structure
--acaaacaaucc    C                 c   a   g  ca     g 
             cUGC UGGCUCCCUGUAUGCCA cug gaa cc  ccgaa u
             |||| ||||||||||||||||| ||| ||| ||  |||||  
             gacg accgaggggcgugcggu gau cuu gg  ggcuu g
uuucucucuucga    u                 c   c   a  ac     u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature smo-miR160b

Accession MIMAT0005219
Description Selaginella moellendorffii smo-miR160b mature miRNA
Sequence 13 - UGCCUGGCUCCCUGUAUGCCA - 33
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769