Stem-loop ppt-MIR1077

Accession

MI0006043

Description

Physcomitrella patens ppt-MIR1077 precursor miRNA

Sequence

aaaauuaccgagaaacuugacuccuUUCAAAUGUUCGGAUGCGUGCggccccgcguuggacuugagcgcgaagcuauauguuaguuuccacucaauacucgAGGGAUGGACGUAUACGAGCCugugaaaggagacaaaaauuuuguacaauu
........(((((...(((.(((((((((...(((((..(((((.((..(((.((..((..(((((.(.(((((((.....)))))))).)))))..)))).))).)).)))))..)))))...))))))))).)))...))))).......

Structure

aaaauuac     aac   a         AAU     GA     G  gc   g  uu  ac     c c       u 
        cgaga   uug cuccuUUCA   GUUCG  UGCGU Cg  ccc cg  gg  uugag g gaagcua a
        |||||   ||| |||||||||   |||||  ||||| ||  ||| ||  ||  ||||| | ||||||| u
        guuuu   aac gaggaaagu   CGAGC  AUGCA GU  GGG gc  uc  aacuc c cuuugau g
-uuaacau     aaa   a         guC     AU     G  -A   A  --  au     a -       u 

Annotation confidence Not enough data

Genome context

Chr24: 4035188-4035339 [+]

Mature ppt-miR1077-5p

• Accession: MIMAT0005208
• Description: Physcomitrella patens ppt-miR1077-5p mature miRNA
• Sequence: 26 - UUCAAAUGUUCGGAUGCGUGC - 46
• Evidence: experimental ; 454 [1]

Mature ppt-miR1077-3p

• Accession: MIMAT0005209
• Description: Physcomitrella patens ppt-miR1077-3p mature miRNA
• Sequence: 102 - AGGGAUGGACGUAUACGAGCC - 122
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769