Stem-loop ppt-MIR1068

Accession

MI0006034

Description

Physcomitrella patens ppt-MIR1068 precursor miRNA

Sequence

cuuuucaacaccuuggcgcuggccuucgUAGCCAUUUGCUUGAAGGUCAacucagacggguggaagaggcaauguauugacgucuuccuccauuuuccgaccauucucuaggcaccacagaggcaucaaugcucugccuguuucugccguguggguugguccucaagcaacgggcuacgaggaccaaugucaauaagcaucaac
............((((((.(((.((((((((((..((((((((.((((((((((.((((..((((.(((((..(((((((.(((((..........((............)).......))))).)))))))..))))).))))..)))).)))))))).))))))))))..)))))))))).))).))))))...........

Structure

cuuuucaacacc      c   c          AU        A  -        g    gu    g     au       c     ccuccauuuu  gacca 
            uuggcg ugg cuucgUAGCC  UUGCUUGA GG UCAacuca acgg  ggaa aggca  guauuga gucuu          cc     u
            |||||| ||| ||||||||||  |||||||| || |||||||| ||||  |||| |||||  ||||||| |||||          ||      
            aacugu acc ggagcaucgg  aacgaacu cc gguugggu ugcc  cuuu uccgu  cguaacu cggag          gg     u
-caacuacgaau      a   a          gc        -  u        g    gu    g     cu       a     ---acaccac  aucuc 

Annotation confidence Not enough data

Genome context

Chr22: 7773863-7774066 [-]

Mature ppt-miR1068

• Accession: MIMAT0005195
• Description: Physcomitrella patens ppt-miR1068 mature miRNA
• Sequence: 29 - UAGCCAUUUGCUUGAAGGUCA - 49
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769