Stem-loop ppt-MIR1067

Accession

MI0006033

Description

Physcomitrella patens ppt-MIR1067 precursor miRNA

Sequence

agacuuguuguuugcgguuaauuaauugcACAUACUGAAGUUUGAUGCCAuguucugaugaauccggucuugauuccugaaggaaagaaacaugaaauugccgcuguggcaucucuacauggcaucaaacgucagcauguguaaauaguuaauugcacgacaccagaa
....(((.((((((((((((((((.((((((((.((((.((((((((((((((...((((....((((.((..((((....))))..))..........))))......))))...)))))))))))))).)))).)))))))).)))))))))))).)))).)))..

Structure

agac   u    -            a        A    A              ucu    --aauc    ---------c  ga    u 
    uug uguu ugcgguuaauua uugcACAU CUGA GUUUGAUGCCAugu   gaug      cggu          uu  uucc g
    ||| |||| |||||||||||| |||||||| |||| ||||||||||||||   ||||      ||||          ||  ||||  
    gac acag acguuaauugau aaugugua gacu caaacuacgguaca   cuac      gccg          aa  aagg a
--aa   c    c            a        c    g              ucu    gguguc    uuaaaguaca  ga    a 

Annotation confidence Not enough data

Genome context

Chr09: 4199299-4199466 [-]

Mature ppt-miR1067

• Accession: MIMAT0005194
• Description: Physcomitrella patens ppt-miR1067 mature miRNA
• Sequence: 30 - ACAUACUGAAGUUUGAUGCCA - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769