Stem-loop ppt-MIR1063h

Accession

MI0006029

Description

Physcomitrella patens ppt-MIR1063h precursor miRNA

Gene family

MIPF0000381; MIR1063

Sequence

aagaacggcaaagguccgucguccacuuaCAUCUUGGAGUACUGCAUCUUcagaucuguugcacguucacugccuguuuuaccagccuccaugaaccauuugaauuugggcuucucuaacggagggaaucaugaagaaugcugguuugauaacagcgcuaaaccugcguacaaagaugaagaugcuuuucuccgagaagugcaugggcgacgguccacaucuagcgc
............((.((((((((((..(((.((((((((....(((((((((..(.(((((((.(((....(((((((..((((((((.(((((.(((........)))..((((((.....))))))))))).))...)))))).....))))).))..))).)))).))).)..)))))))))....)))))))).)))..)))))))))).))...........

Structure

aagaacggcaaa  u          cu   A        UACU         ga c   -    c   cacu  -     ---uu      ---  c     accauuugaauuugggc      a 
            gg ccgucgucca  uaC UCUUGGAG    GCAUCUUca  u ugu ugca guu    gc cuguu     accagc   cu cauga                 uucucu a
            || ||||||||||  ||| ||||||||    |||||||||  | ||| |||| |||    || |||||     ||||||   || |||||                 |||||| c
            cc ggcagcgggu  gug agagccuc    cguagaagu  a aca gcgu caa    cg gacaa     uggucg   ga guacu                 aaggga g
-cgcgaucuaca  u          ac   a        uuuu         ag a   u    c   --au  c     uaguu      uaa  a     -----------------      g 

Annotation confidence Not enough data

Genome context

Chr07: 8303031-8303257 [-]

Mature ppt-miR1063h

• Accession: MIMAT0005189
• Description: Physcomitrella patens ppt-miR1063h mature miRNA
• Sequence: 30 - CAUCUUGGAGUACUGCAUCUU - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769