Stem-loop ppt-MIR1063d

Accession

MI0006025

Description

Physcomitrella patens ppt-MIR1063d precursor miRNA

Gene family

MIPF0000381; MIR1063

Sequence

acuacacuuauugccuuuuugcccacccuCAUCUUGGAGUACUGCAUCUUcaugucggcugcuuuucaugucuggcuacgagguugcucaugugauuagguuugauccauguuaggcuuuagguuguaucagugaauuagugucgacaguuaggagugaaacuuuuuuuagcuguugauacgcgggaguuaugggauucucauuucaacacaauguaaucuugugucaauccagccuaugcuuguagaguuacugagucacaugagcacaucgaaugccuuugaggcuuugaaauucuaccgacgaguagaugcagaacuacaagaagcgaguggguaacaggcuauuuuucaaga
............((((..((((((((.(.(.(((((.(((.((((((((.(.((((((..(..(((((.(((((((..(((.((.((((((((((((.(((....((.....(((((..(((((((.............(((((((((((((((((........)))))))))))))))))..(((((((....)))))))......((((((.......)))))).....))))))).)))))..))...))).)))))))))))))).)))...)))....))))..)))))..)..)))))).).)))))))).))).))))).).).)))))))).))))............

Structure

acuacacuuauu    uu        c u A     G   A        U a      cu cu     -u    ----   -ua   g  u            a   uuga  caugu     uu       -------------------------------------uaucagugaauua                 uga 
            gccu  uugcccac c C UCUUG AGU CUGCAUCU c ugucgg  g  uuuca  gucu    ggc   cga gu gcucaugugauu ggu    uc     uaggc  uagguug                                                  gugucgacaguuaggag   a
            ||||  |||||||| | | ||||| ||| |||||||| | ||||||  |  |||||  ||||    |||   ||| || |||||||||||| |||    ||     |||||  |||||||                                                  |||||||||||||||||    
            cgga  aaugggug g g agaac uca gacguaga g gcagcc  c  aaagu  cgga    ccg   gcu ca cgaguacacuga uca    ag     guucg  auccgac                                                  cauaguugucgauuuuu   a
agaacuuuuuau    -c        a c a     a   a        u a      au uu     uu    guuu   uaa   a  -            g   -uug  ---au     -u       cuaacuguguucuaauguaacacaacuuuacucuuaggguauugagggcg                 uuc 

Annotation confidence Not enough data

Genome context

Chr22: 9278038-9278393 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1063d

Mature ppt-miR1063d

• Accession: MIMAT0005185
• Description: Physcomitrella patens ppt-miR1063d mature miRNA
• Sequence: 30 - CAUCUUGGAGUACUGCAUCUU - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769