Stem-loop ppt-MIR1063a

Accession

MI0006022

Description

Physcomitrella patens ppt-MIR1063a precursor miRNA

Gene family

MIPF0000381; MIR1063

Sequence

gaacgacgacaggguccgucgcucacuuaCAUCUUGGAGUACUGCAUCUUcggaucuguugcgccuuccgugccugcucuggcaaucgucaugagccguuggaauguggaaaauuccuaucgugaaucauggugguuugagaaccgcgcggaaagcaacauucaaauuuguggaugcauuacuccaagaagugcgugggcaacgggcuacuugcagcug
......(..((((((((((.((((((.(((.((((((((((.(((((((.(((((.((((((...((((((((..((((((((....)))).))))....(((((.......))))).((((((...))))))((((....)))))))))))).)))))).....))))).))))))).)))))))))).))).)))))).))))))..))))..)...

Structure

gaacga ga    --      c      u   A          C       U     ----c      gcc        -----------------------------------------------cu    -    a 
      c  cagg  guccgu gcucac uaC UCUUGGAGUA UGCAUCU cggau     uguugc   uuccgugc                                                 gcuc uggc a
      |  ||||  |||||| |||||| ||| |||||||||| ||||||| |||||     ||||||   ||||||||                                                 |||| ||||  
      g  guuc  cgggca cgggug gug agaaccucau acguagg guuua     acaacg   aaggcgcg                                                 cgag acug u
---guc ac    au      a      c   a          u       u     aacuu      --a        ccaagaguuuggugguacuaagugcuauccuuaaaagguguaagguugc    u    c 

Annotation confidence Not enough data

Genome context

Chr11: 11452562-11452780 [-]

Mature ppt-miR1063a

• Accession: MIMAT0005182
• Description: Physcomitrella patens ppt-miR1063a mature miRNA
• Sequence: 30 - CAUCUUGGAGUACUGCAUCUU - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769