Stem-loop ppt-MIR1062

Accession

MI0006021

Description

Physcomitrella patens ppt-MIR1062 precursor miRNA

Sequence

cgaguucgcuuugcacgggguuguugucgUCCCUCACGUGGUGUUUGCAGCuaggaugucgggaggggucgauguguuguggaauguuccgcuccuugaaauuugagugacccuuaccgucugccagugaggccgcuugcaaacacccguaugggacgacgaagcucugguguugcucaacauc
.((((..((...((.(((((((.((((((((((..(((.((((((((((((......(.(((..(((((((....(..(((((....)))))..)............)))))))..))).).(((.....))).)).)))))))))))))..))))))))))))))))))))).))))......

Structure

-----c    uc  uuu  a       g          UC   U          -  -------uaggau u   ga       --------augu uu     a 
      gagu  gc   gc cgggguu uugucgUCCC  ACG GGUGUUUGCA GC             g cgg  ggggucg            g  gugga u
      ||||  ||   || ||||||| ||||||||||  ||| |||||||||| ||             | |||  |||||||            |  |||||  
      cucg  ug   ug gucucga agcagcaggg  ugc ccacaaacgu cg             c gcc  ucccagu            c  cgccu g
cuacaa    -u  ---  -       -          ua   -          u  ccggagugaccgu u   au       gaguuuaaaguu cu     u 

Annotation confidence Not enough data

Genome context

Chr23: 12810997-12811180 [+]

Mature ppt-miR1062

• Accession: MIMAT0005181
• Description: Physcomitrella patens ppt-miR1062 mature miRNA
• Sequence: 30 - UCCCUCACGUGGUGUUUGCAGC - 51
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769