Stem-loop ppt-MIR1059

Accession

MI0006018

Description

Physcomitrella patens ppt-MIR1059 precursor miRNA

Sequence

ugcgaggcaaccuugaucccauuacgacgUGAAAGUCCUUCACAAACAACaguguuuaaaggaaucaccuagaagucauuguguaggagcuuggugggcgaucuaauugcaaucaaggaccgcccagucgcuaccauuuaacgccauccuccgaccugggacucgcguuguuuguggaggacuuucacgccguaaugagaucacuaguucuguuu
...((((...))))((((.(((((((.((((((((((((((((((((((((((((((..(((.....)))..))).))))))...(((((..(.((((((.(((..(((....)))))).)))))).).))).)).....((((..((((.......))))...))))))))))))))))))))))))).))))))).)))).............

Structure

ugcgaggcaaccuu    c       a                     --------------------------------------------------------------------------------------      -   aa   a 
              gauc cauuacg cgUGAAAGUCCUUCACAAACA                                                                                      ACagug uuu  agg a
              |||| ||||||| |||||||||||||||||||||                                                                                      |||||| |||  ||| u
              cuag guaaugc gcacuuucaggagguguuugu                                                                                      uguuac gaa  ucc c
-uuugucuugauca    a       c                     ugcgcucaggguccagccuccuaccgcaauuuaccaucgcugacccgccaggaacuaacguuaaucuagcgggugguucgaggaug      u   ga   a 

Annotation confidence Not enough data

Genome context

Chr16: 1682293-1682507 [-]

Mature ppt-miR1059

• Accession: MIMAT0005177
• Description: Physcomitrella patens ppt-miR1059 mature miRNA
• Sequence: 30 - UGAAAGUCCUUCACAAACAAC - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769