miRBase entry: ppt-MIR1056

Stem-loop ppt-MIR1056


Accession
MI0006015
Description
Physcomitrella patens ppt-MIR1056 precursor miRNA


Sequence

guccaugguaggaaaccuaaaacaaagcccaggguuauguugcaaaaauccaggugauguaaguaaaaguccaagugaagaaacuuaccucaccUGGAUCUUUGCAUCAUAACCCugggcuuuauuuugguaaucuuauuacgga
.(((.((((((((...((((((.((((((((((((((((.((((((.((((((((((.((((((.....((.....))....)))))).)))))))))).)))))).)))))))))))))))).))))))...)))))))).)))

Structure
g   a        aac      c                u      a          u      aaaag  c 
 ucc ugguagga   cuaaaa aaagcccaggguuaug ugcaaa auccagguga guaagu     uc a
 ||| ||||||||   |||||| |||||||||||||||| |||||| |||||||||| ||||||     || a
 agg auuauucu   gguuuu uuucggguCCCAAUAC ACGUUU UAGGUccacu cauuca     ag g
-   c        aau      a                U      C          c      -aaga  u 


Annotation confidence Not enough data
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Genome context
Chr17: 1953900-1954044 [-]

Database links

Mature ppt-miR1056

Accession MIMAT0005174
Description Physcomitrella patens ppt-miR1056 mature miRNA
Sequence 95 - UGGAUCUUUGCAUCAUAACCC - 115
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769