Stem-loop ppt-MIR1055

Accession

MI0006014

Description

Physcomitrella patens ppt-MIR1055 precursor miRNA

Sequence

uccucucgguugccuuagagcauccgcagccagccacuggaaacaccccugaaucacuauaccauacuauuauugauaucaagguguaacaaauauugugauUUAGGGGUGUUUUCCAGUGACUugcuguagaugcucuuacaucuguugucua
......(((.((....((((((((.(((((.((.(((((((((((((((((((((((((((((....((((...))))....)))))).........)))))))))))))).))))))))).)).))))).))))))))..)).))).......

Structure

-uccucu   u  ccuu        c     c  c         -              ---------      auac    a 
       cgg ug    agagcauc gcagc ag cacuggaaa caccccugaaucac         uauacc    uauu  
       ||| ||    |||||||| ||||| || ||||||||| ||||||||||||||         ||||||    |||| u
       guc ac    ucucguag ugucg UC GUGACCUUU GUGGGGAUUuagug         augugg    auag  
aucuguu   u  --au        a     u  A         U              uuauaaaca      aacu    u 

Annotation confidence Not enough data

Genome context

Chr12: 7457064-7457217 [+]

Mature ppt-miR1055

• Accession: MIMAT0005173
• Description: Physcomitrella patens ppt-miR1055 mature miRNA
• Sequence: 103 - UUAGGGGUGUUUUCCAGUGACU - 124
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769