Stem-loop ppt-MIR1054

Accession

MI0006013

Description

Physcomitrella patens ppt-MIR1054 precursor miRNA

Sequence

gcgacauggauuccaauuuuggaggcaaagggaggaguagaagggagggcuuaacucgacaucugaaagcauugguugcaugcuguguucuucaaccugacgguguucugcagcaaugcacaccuucugaugacguugcugcggacacucgguucaaguaggaucacuguuaccaacgccggucugugucacagUAAACCCUCUCUCUAUUCCUGucuuugccuuacaaacauguaccugggacg
...(((((.........((((((((((((((.(((((((((.(((((((.(((....(((((..((..((.(((((.(((....(((.((((..((.(((((((((.(((((((((((((((.....)).)).))))))))))))))).))..))).)))))).)))))).))))).))...)).)))))....))).)))))))))))))))).)))))))))).)))))))))..........

Structure

-------gcg     gauuccaau    -          g         a       c   acuc     cu  -aa  a     u   ugcu   u    ca  c   --  -    u           -  -  c 
          acaug         uuug gaggcaaagg aggaguaga gggaggg uua    gacau  ga   gc uuggu gca    gug ucuu  ac uga  cg gugu cugcagcaaug ca ca c
          |||||         |||| |||||||||| ||||||||| ||||||| |||    |||||  ||   || ||||| |||    ||| ||||  || |||  || |||| ||||||||||| || || u
          uguac         aaac uuccguuucu UCCUUAUCU CUCUCCC AAU    cugug  cu   cg aacca ugu    cac agga  ug acu  gc caca ggcgucguugc gu gu u
gcagggucca     ---------    a          G         -       A   gaca     -u  ggc  c     u   ----   u    --  a   ug  u    -           a  a  c 

Annotation confidence Not enough data

Genome context

Chr03: 23795583-23795827 [-]

Mature ppt-miR1054

• Accession: MIMAT0005172
• Description: Physcomitrella patens ppt-miR1054 mature miRNA
• Sequence: 195 - UAAACCCUCUCUCUAUUCCUG - 215
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769