miRBase entry: ppt-MIR1051

Stem-loop ppt-MIR1051


Accession
MI0006010
Description
Physcomitrella patens ppt-MIR1051 precursor miRNA


Sequence

uuggcgucucgucuugcgccgauaccuuaacguGGUUCAAGUGAACAGGAAGAgguuugcgagaauguuguucugaaagaauuaaccuggacagaguagcgcagaaugcaacacuaggguuucggaguaucauucuaacaaaucucUUCCUGUCUACUUGAAGCCACaauaaggcuuggugccugcuaugagguaag
(((((((........)))))))(((((((..((((((((((((.(((((((((((((((..((((((.((((((((((.......(((((.....(((........)))....))))).)))))))))).))))))..))))))))))))))).)))))).))))))....((((.....))))....)))))))..

Structure
uuggcgucucgucuugcgccga       -------------------ac      -      A               cg      u          gaauuaa     acaga   gcg 
                      uaccuua                     guGGUU CAAGUG ACAGGAAGAgguuug  agaaug uguucugaaa       ccugg     gua   c
                      |||||||                     |||||| |||||| |||||||||||||||  |||||| ||||||||||       |||||     |||    
                      auggagu                     CACCGA GUUCAU UGUCCUUcucuaaac  ucuuac augaggcuuu       ggauc     cgu   a
--------------------ga       aucguccgugguucggaauaa      A      C               aa      u          ------g     -acaa   aag 


Annotation confidence Not enough data
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Genome context
Chr12: 5498625-5498821 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppt-MIR1051
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppt-miR1051-5p

Accession MIMAT0005167
Description Physcomitrella patens ppt-miR1051-5p mature miRNA
Sequence 34 - GGUUCAAGUGAACAGGAAGA - 53
Evidence experimental
454 [1]

Mature ppt-miR1051-3p

Accession MIMAT0005168
Description Physcomitrella patens ppt-miR1051-3p mature miRNA
Sequence 147 - UUCCUGUCUACUUGAAGCCAC - 167
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769