Stem-loop ppt-MIR1048

Accession

MI0006007

Description

Physcomitrella patens ppt-MIR1048 precursor miRNA

Sequence

uuccauuacugaugccucgucuacaagucUAGAACAUGAGUGUAGACGACuuaugugcugcaacuggcaugcuggaaguuauuauccaacacauauguUGUCUACACUCAUGUUCUAGAcuuguagacaaauagcagcuguuacu
.......((...(((...((((((((((((((((((((((((((((((((.((((((.(((.....)))...((((........)))).)))))).)))))))))))))))))))))))))))))))).....)))...))....

Structure

uuccauu  uga   --cuc                                u      cugcaacuggcaugc    agu 
       ac   ugc     gucuacaagucUAGAACAUGAGUGUAGACGAC uaugug               ugga   u
       ||   |||     |||||||||||||||||||||||||||||||| ||||||               ||||    
       ug   acg     cagauguucAGAUCUUGUACUCACAUCUGUug auacac               accu   a
---ucau  ucg   auaaa                                u      --------------a    auu 

Annotation confidence Not enough data

Genome context

Chr15: 10706443-10706587 [-]

Mature ppt-miR1048-5p

• Accession: MIMAT0005163
• Description: Physcomitrella patens ppt-miR1048-5p mature miRNA
• Sequence: 30 - UAGAACAUGAGUGUAGACGAC - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR1048-3p

• Accession: MIMAT0005164
• Description: Physcomitrella patens ppt-miR1048-3p mature miRNA
• Sequence: 99 - UGUCUACACUCAUGUUCUAGA - 119
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769