miRBase entry: ppt-MIR1047

Stem-loop ppt-MIR1047


Accession
MI0006006
Description
Physcomitrella patens ppt-MIR1047 precursor miRNA

Literature search
1 open access papers mention ppt-MIR1047
(2 sentences)

Sequence

uugcguuaugugugaccuaugaccucuuggaucACUAGGUAGUCCUUGAUUACAaaggccuuaauucuuuacagcaaacgaguuaaggccccugUGAUCAGCGAUGACCUAGUUGcucaauugggcacagugucucuucgcgagg
(((((......(.(((((.((.((..((((...(((((((.(((.(((((((((..(((((((((((.((......)).)))))))))))..))))))))).))).)))))))...))))..)).)).)).))).)..)))))..

Structure
--     uuaugu u   -  a  a  uc    auc       A   C         aa           u  ac 
  uugcg      g gac cu ug cc  uugg   ACUAGGU GUC UUGAUUACA  ggccuuaauuc uu  a
  |||||      | ||| || || ||  ||||   ||||||| ||| |||||||||  ||||||||||| ||   
  agcgc      c cug ga ac gg  aacu   UGAUCCA UAG GACUAGUgu  ccggaauugag aa  g
gg     ----uu u   u  c  g  uu    cGU       G   C         cc           c  ac 


Annotation confidence Not enough data
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Genome context
Chr02: 10752542-10752686 [+]

Database links

Mature ppt-miR1047-5p

Accession MIMAT0005161
Description Physcomitrella patens ppt-miR1047-5p mature miRNA
Sequence 34 - ACUAGGUAGUCCUUGAUUACA - 54
Evidence experimental
454 [1]

Mature ppt-miR1047-3p

Accession MIMAT0005162
Description Physcomitrella patens ppt-miR1047-3p mature miRNA
Sequence 95 - UGAUCAGCGAUGACCUAGUUG - 115
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769