Stem-loop ppt-MIR1046

Accession

MI0006005

Description

Physcomitrella patens ppt-MIR1046 precursor miRNA

Sequence

ucuauaucuugaugcucaaaauucagacgUGGAUUUCAUAUUUUUCACGucaagaaucucacagguacaauuaagucaugagauucuugUGGUGAAAAAUAUGAAAAAUCcacgucugaauuuugaaagcgcuugcccuc
.............(((((((((((((((((((((((((((((((((((..(((((((((((...(.((......))).)))))))))))..)))))))))))))..))))))))))))))))))))..))..........

Structure

ucuauaucuugau  --                    --             Gu           cag u  aa 
             gc  ucaaaauucagacgUGGAUU  UCAUAUUUUUCAC  caagaaucuca   g ac  u
             ||  ||||||||||||||||||||  |||||||||||||  |||||||||||   | ||   
             cg  aguuuuaagucugcacCUAA  AGUAUAAAAAGUG  guucuuagagu   c ug  u
---cucccguucg  aa                    AA             GU           --a -  aa 

Annotation confidence Not enough data

Genome context

Chr19: 8168449-8168588 [+]

Mature ppt-miR1046-5p

• Accession: MIMAT0005159
• Description: Physcomitrella patens ppt-miR1046-5p mature miRNA
• Sequence: 30 - UGGAUUUCAUAUUUUUCACG - 49
• Evidence: experimental ; 454 [1]

Mature ppt-miR1046-3p

• Accession: MIMAT0005160
• Description: Physcomitrella patens ppt-miR1046-3p mature miRNA
• Sequence: 90 - UGGUGAAAAAUAUGAAAAAUC - 110
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769