Stem-loop ppt-MIR1045

Accession

MI0006004

Description

Physcomitrella patens ppt-MIR1045 precursor miRNA

Sequence

gaagcgauaaugggugcacccucaacacgAAGUGCUGGCUUUUUGACGUUuugcuacuaaaugaauaaccgugcagguuaaauucacuagcagcaagacgucaaacaaccagcacuucgccuucagggcaacuaguguguaucgg
....(((((...(((...((((.((..(((((((((((...((((((((((((((.(((..(((((((((.....)))))..)))).))).))))))))))))))...)))))))))))..)).))))..)))......))))).

Structure

gaag     ---aug   gca    c  ca           CUU              a   aa    --     g 
    cgaua      ggu   cccu aa  cgAAGUGCUGG   UUUGACGUUuugcu cua  ugaa  uaacc u
    |||||      |||   |||| ||  |||||||||||   |||||||||||||| |||  ||||  ||||| g
    gcuau      uca   ggga uu  gcuucacgacc   aaacugcagaacga gau  acuu  auugg c
---g     guguga   -ac    c  cc           aac              c   -c    aa     a 

Annotation confidence Not enough data

Genome context

Chr12: 1736440-1736584 [-]

Mature ppt-miR1045

• Accession: MIMAT0005158
• Description: Physcomitrella patens ppt-miR1045 mature miRNA
• Sequence: 30 - AAGUGCUGGCUUUUUGACGUU - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769