Stem-loop ppt-MIR1043

Accession

MI0006002

Description

Physcomitrella patens ppt-MIR1043 precursor miRNA

Sequence

ugagaagagauuuaacuaggaaacgguuggaggCCUUCAACUUCAUGCGUGCAaacccugaaugauuuggauggauuuUUGCGCGUGAAUUUGAAGGCUcccauucguugcuagcaugaagaauaagag
...............((((..(((((.(((.(((((((((.((((((((((.(((.((..............)).))).)))))))))).))))))))).))).))))).))))...............

Structure

ugagaagagauuuaa    ga     u   a         C          C   c  ugaaug 
               cuag  aacgg ugg ggCCUUCAA UUCAUGCGUG Aaa cc      a
               ||||  ||||| ||| ||||||||| |||||||||| ||| ||       
               gauc  uugcu acc UCGGAAGUU AAGUGCGCGU uuu gg      u
gagaauaagaaguac    -g     u   c         U          U   a  uagguu 

Annotation confidence Not enough data

Genome context

Chr04: 1949933-1950061 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1043

Mature ppt-miR1043-5p

• Accession: MIMAT0005154
• Description: Physcomitrella patens ppt-miR1043-5p mature miRNA
• Sequence: 34 - CCUUCAACUUCAUGCGUGCA - 53
• Evidence: experimental ; 454 [1]

Mature ppt-miR1043-3p

• Accession: MIMAT0005155
• Description: Physcomitrella patens ppt-miR1043-3p mature miRNA
• Sequence: 79 - UUGCGCGUGAAUUUGAAGGCU - 99
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769