Stem-loop ppt-MIR1042

Accession

MI0006001

Description

Physcomitrella patens ppt-MIR1042 precursor miRNA

Sequence

gugagauucuucaauacugugcagaagggGCUGUGCAGGAACUAGAUAGGuccauugcuggauaugcuugucgacggcauuggucgUGUCUAGUCUCUCCACGGCCCGcucuguguuugauugccacgcacua
(((.(.....((((.((...(((((..((((((((.(((.((((((((.(.(((.(((((((((....))))..))))).))).).)))))))).))).))))))))..)))))))))))...))))......

Structure

------   a auucu    u  ugu     ag        C   A        G u   u     --    u 
      gug g     ucaa ac   gcaga  ggGCUGUG AGG ACUAGAUA G cca ugcug  gaua g
      ||| |     |||| ||   |||||  |||||||| ||| |||||||| | ||| |||||  ||||  
      cac c     aguu ug   ugucu  CCCGGCAC UCU UGAUCUGU c ggu acggc  cugu c
aucacg   - --guu    -  ---     cG        C   C        g u   u     ag    u 

Annotation confidence Not enough data

Genome context

Chr04: 1949553-1949685 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1042

Mature ppt-miR1042-5p

• Accession: MIMAT0005152
• Description: Physcomitrella patens ppt-miR1042-5p mature miRNA
• Sequence: 30 - GCUGUGCAGGAACUAGAUAGG - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR1042-3p

• Accession: MIMAT0005153
• Description: Physcomitrella patens ppt-miR1042-3p mature miRNA
• Sequence: 87 - UGUCUAGUCUCUCCACGGCCCG - 108
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769