Stem-loop ppt-MIR1039

Accession

MI0005998

Description

Physcomitrella patens ppt-MIR1039 precursor miRNA

Sequence

aggagcuuauugugucagccacauuagggUCUUUGGGUCUUUCUCUCCUGaaaauguuaagagcuugagcgcuuaauuuuucaGGGGAGACGGGCUCAAGGAUCuugaagugguugccuggggaugauaa
......(((((.(..(((((((.(((((((((((((((((.(((((((((((((.((((((.((....)).))))))))))))))))))).))))))))))))))))).)))))))....).)))))...

Structure

aggagc     g --gu       a                 U             u      a  u 
      uuauu u    cagccac uuagggUCUUUGGGUCU UCUCUCCUGaaaa guuaag gc u
      ||||| |    ||||||| ||||||||||||||||| ||||||||||||| |||||| ||  
      aguag g    guuggug aguuCUAGGAACUCGGG AGAGGGGacuuuu uaauuc cg g
---aau     g gucc       a                 C             -      g  a 

Annotation confidence Not enough data

Genome context

Chr08: 247422-247551 [-]

Mature ppt-miR1039-5p

• Accession: MIMAT0005148
• Description: Physcomitrella patens ppt-miR1039-5p mature miRNA
• Sequence: 30 - UCUUUGGGUCUUUCUCUCCUG - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR1039-3p

• Accession: MIMAT0005149
• Description: Physcomitrella patens ppt-miR1039-3p mature miRNA
• Sequence: 84 - GGGGAGACGGGCUCAAGGAUC - 104
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769