Stem-loop ppt-MIR1038

Accession

MI0005997

Description

Physcomitrella patens ppt-MIR1038 precursor miRNA

Sequence

agugacauggacucgugacacgagcauccUAGGUGCGUUUCCACCAAAGagagcaccaucauuuuguguacucCAUGGUGGAAUCGCAUCCAGGaugccauuguuacgauuagcgaacgc
.(((........((((((((...(((((((.((((((.((((((((..(((.((((.........)))).)))..)))))))).)))))).)))))))...))))))))........)))

Structure

a   acauggac        cga       A      U        AA   a    cau 
 gug        ucgugaca   gcauccU GGUGCG UUCCACCA  Gag gcac   c
 |||        ||||||||   ||||||| |||||| ||||||||  ||| ||||   a
 cgc        agcauugu   cguaGGA CUACGC AAGGUGGU  cuc ugug   u
-   aagcgauu        uac       C      U        AC   a    uuu 

Annotation confidence Not enough data

Genome context

Chr08: 4261703-4261822 [+]

Mature ppt-miR1038-5p

• Accession: MIMAT0005146
• Description: Physcomitrella patens ppt-miR1038-5p mature miRNA
• Sequence: 30 - UAGGUGCGUUUCCACCAAAG - 49
• Evidence: experimental ; 454 [1]

Mature ppt-miR1038-3p

• Accession: MIMAT0005147
• Description: Physcomitrella patens ppt-miR1038-3p mature miRNA
• Sequence: 74 - CAUGGUGGAAUCGCAUCCAGG - 94
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769