miRBase entry: ppt-MIR1030j

Stem-loop ppt-MIR1030j


Accession
MI0005984
Description
Physcomitrella patens ppt-MIR1030j precursor miRNA
Gene family
MIPF0000380; MIR1030


Sequence

agccuccucuucagcgcuguaaugccauguuCCUGCAUCUGCACCUGCACCAcacuucuacgagagaaugugcagaagucagagcgguguugugcgaauccugcucucagucaauugcugggauugcguuucuccaaucuucuuucucugggcuuuucucuggcauuguggugguguaggugcuuaugcagaaauauugccuugcagcuugcaguuacuagu
........((.(((.(((((((.((.(((((.((((((..(((((((((((((((..(((.(((((((.((.((((....(((((((.(((.....))).)))))))((((.....))))((((((.(.....)))))))......)))).))))))))))))....)).)))))))))))))..)))))).))))).)).)))))))))).))........

Structure
agccuccu  u   c       u  c     C      CU             -  --uu   c       u  g    -----------------------------------aguc       u   g 
        cu cag gcuguaa gc auguu CUGCAU  GCACCUGCACCAc ac    cua gagagaa gu caga                                       agagcgg guu u
        || ||| ||||||| || ||||| ||||||  ||||||||||||| ||    ||| ||||||| || ||||                                       ||||||| ||| g
        ga guu cgacguu cg uauaa gacgua  cguggauguggug ug    ggu cucuuuu cg gucu                                       ucucguc uaa c
ugaucauu  c   -       c  u     a      uu             g  uuac   -       -  g    cuuucuucuaaccucuuugcguuagggucguuaacugac       c   g 


Annotation confidence Not enough data
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Genome context
Chr10: 1726020-1726241 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1030j
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppt-miR1030j

Accession MIMAT0005132
Description Physcomitrella patens ppt-miR1030j mature miRNA
Sequence 32 - CCUGCAUCUGCACCUGCACCA - 52
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769